J4_9WNR_007

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9WNR|1|b|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9WNR_007 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2186

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

9WNR|1|b|C|268
9WNR|1|b|C|269
*
9WNR|1|b|G|370
9WNR|1|b|A|371
9WNR|1|b|G|372
9WNR|1|b|U|373
9WNR|1|b|A|374
9WNR|1|b|G|375
*
9WNR|1|b|U|399
9WNR|1|b|G|400
9WNR|1|b|A|401
9WNR|1|b|A|402
9WNR|1|b|U|403
9WNR|1|b|A|404
9WNR|1|b|U|405
9WNR|1|b|G|406
*
9WNR|1|b|C|421
9WNR|1|b|A|422
9WNR|1|b|A|423
9WNR|1|b|G|424

Current chains

Chain b

23S rRNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL28

Chain h

50S ribosomal protein L9