J4_9WW5_008

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GAC(PSU)G*CAAAG*UGAUU*A(PSU)GA(A2M)C

Length

21 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9WW5_008 not in the Motif Atlas

Homologous match to J4_8GLP_009

Geometric discrepancy: 0.1271

The information below is about J4_8GLP_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.4

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

8

Unit IDs

9WW5|1|AA|G|3634
9WW5|1|AA|A|3635
9WW5|1|AA|C|3636
9WW5|1|AA|PSU|3637
9WW5|1|AA|G|3638
*
9WW5|1|AA|C|3650
9WW5|1|AA|A|3651
9WW5|1|AA|A|3652
9WW5|1|AA|A|3653
9WW5|1|AA|G|3654
*
9WW5|1|AA|U|3690
9WW5|1|AA|G|3691
9WW5|1|AA|A|3692
9WW5|1|AA|U|3693
9WW5|1|AA|U|3694
*
9WW5|1|AA|A|3821
9WW5|1|AA|PSU|3822
9WW5|1|AA|G|3823
9WW5|1|AA|A|3824
9WW5|1|AA|A2M|3825
9WW5|1|AA|C|3826

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AD

60S ribosomal protein L8

Chain Ap

60S ribosomal protein L41

Chain Ar

60S ribosomal protein L37a

Chain BA

Small subunit ribosomal RNA; SSU rRNA