J4_9WW5_013

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

C(A2M)(PSU)UAAA(PSU)C*GCC*G(PSU)GAC*GG

Length

19 nucleotides

Bulged bases

9WW5|1|BA|G|407

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9WW5_013 not in the Motif Atlas

Homologous match to J4_9H3G_013

Geometric discrepancy: 0.1469

The information below is about J4_9H3G_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_15241.5

Basepair signature

cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW

Number of instances in this motif group

5

Unit IDs

9WW5|1|BA|C|98
9WW5|1|BA|A2M|99
9WW5|1|BA|PSU|100
9WW5|1|BA|U|101
9WW5|1|BA|A|102
9WW5|1|BA|A|103
9WW5|1|BA|A|104
9WW5|1|BA|PSU|105
9WW5|1|BA|C|106
*
9WW5|1|BA|G|355
9WW5|1|BA|C|356
9WW5|1|BA|C|357
*
9WW5|1|BA|G|405
9WW5|1|BA|PSU|406
9WW5|1|BA|G|407
9WW5|1|BA|A|408
9WW5|1|BA|C|409
*
9WW5|1|BA|G|431
9WW5|1|BA|G|432

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BB

40S ribosomal protein S4, X isoform

Chain BH

40S ribosomal protein S8

Chain BJ

40S ribosomal protein S11

Chain BQ

40S ribosomal protein S23