J4_9WW5_014

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

AAG*CGAAAG*CCAUAAACGAUG*UU

Length

23 nucleotides

Bulged bases

9WW5|1|BA|A|672, 9WW5|1|BA|A|1083, 9WW5|1|BA|C|1085, 9WW5|1|BA|A|1087

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9WW5_014 not in the Motif Atlas

Homologous match to J4_9H3G_014

Geometric discrepancy: 0.0785

The information below is about J4_9H3G_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_14595.4

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-cWW-F

Number of instances in this motif group

7

Unit IDs

9WW5|1|BA|A|671
9WW5|1|BA|A|672
9WW5|1|BA|G|673
*
9WW5|1|BA|C|1032
9WW5|1|BA|G|1033
9WW5|1|BA|A|1034
9WW5|1|BA|A|1035
9WW5|1|BA|A|1036
9WW5|1|BA|G|1037
*
9WW5|1|BA|C|1078
9WW5|1|BA|C|1079
9WW5|1|BA|A|1080
9WW5|1|BA|U|1081
9WW5|1|BA|A|1082
9WW5|1|BA|A|1083
9WW5|1|BA|A|1084
9WW5|1|BA|C|1085
9WW5|1|BA|G|1086
9WW5|1|BA|A|1087
9WW5|1|BA|U|1088
9WW5|1|BA|G|1089
*
9WW5|1|BA|U|1160
9WW5|1|BA|U|1161

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain Ap

60S ribosomal protein L41

Chain BJ

40S ribosomal protein S11

Chain BQ

40S ribosomal protein S23

Chain BR

40S ribosomal protein S26

Chain BZ

40S ribosomal protein S13

Chain Ba

Small ribosomal subunit protein uS11

Chain Bb

40S ribosomal protein S15a