J4_9XFK_010
3D structure
- PDB id
- 9XFK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of bacterial 50S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- CGAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 9XFK|1|I|A|2288, 9XFK|1|I|G|2382
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9XFK_010 not in the Motif Atlas
- Homologous match to J4_7A0S_009
- Geometric discrepancy: 0.2563
- The information below is about J4_7A0S_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9XFK|1|I|C|2285
9XFK|1|I|G|2286
9XFK|1|I|A|2287
9XFK|1|I|A|2288
9XFK|1|I|G|2289
*
9XFK|1|I|U|2343
9XFK|1|I|U|2344
9XFK|1|I|G|2345
9XFK|1|I|A|2346
9XFK|1|I|C|2347
*
9XFK|1|I|G|2370
9XFK|1|I|G|2371
9XFK|1|I|U|2372
*
9XFK|1|I|A|2381
9XFK|1|I|G|2382
9XFK|1|I|G|2383
Current chains
- Chain I
- 23S rRNA
Nearby chains
- Chain W
- 50S ribosomal protein L18
- Chain e
- 50S ribosomal protein L27
- Chain j
- 50S ribosomal protein L33
- Chain l
- 50S ribosomal protein L35
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