J4_9XFL_001

3D structure

PDB id

9XFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

In vitro structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9XFL|1|I|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9XFL_001 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.252

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9XFL|1|I|C|268
9XFL|1|I|C|269
*
9XFL|1|I|G|370
9XFL|1|I|A|371
9XFL|1|I|G|372
9XFL|1|I|U|373
9XFL|1|I|A|374
9XFL|1|I|G|375
*
9XFL|1|I|U|399
9XFL|1|I|G|400
9XFL|1|I|A|401
9XFL|1|I|A|402
9XFL|1|I|U|403
9XFL|1|I|A|404
9XFL|1|I|U|405
9XFL|1|I|G|406
*
9XFL|1|I|C|421
9XFL|1|I|A|422
9XFL|1|I|A|423
9XFL|1|I|G|424

Current chains

Chain I

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L9

Chain f

50S ribosomal protein L28