J4_9Y49_004

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUUC*GGUCAG*UC*GGCCGUAC

Length

21 nucleotides

Bulged bases

9Y49|1|A6|C|2437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9Y49_004 not in the Motif Atlas

Homologous match to J4_9PN5_004

Geometric discrepancy: 0.1136

The information below is about J4_9PN5_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_17758.1

Basepair signature

cWW-F-cHW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9Y49|1|A6|G|2406
9Y49|1|A6|G|2407
9Y49|1|A6|U|2408
9Y49|1|A6|U|2409
9Y49|1|A6|C|2410
*
9Y49|1|A6|G|2434
9Y49|1|A6|G|2435
9Y49|1|A6|U|2436
9Y49|1|A6|C|2437
9Y49|1|A6|A|2438
9Y49|1|A6|G|2439
*
9Y49|1|A6|U|2538
9Y49|1|A6|C|2539
*
9Y49|1|A6|G|2777
9Y49|1|A6|G|2778
9Y49|1|A6|C|2779
9Y49|1|A6|C|2780
9Y49|1|A6|G|2781
9Y49|1|A6|U|2782
9Y49|1|A6|A|2783
9Y49|1|A6|C|2784

Current chains

Chain A6

LSU-beta rRNA (2069-MER)

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain A8

5.8S ribosomal RNA; 5.8S rRNA

Chain CR

Large ribosomal subunit protein eL19

Chain CX

60S ribosomal protein L23a

Chain Cg

60S ribosomal protein L34

Chain Ch

60S ribosomal protein L35

Chain Cj

60S ribosomal protein L37

Chain Ck

60S ribosomal protein L38

Chain Cl

60S ribosomal protein L39