J4_9Y4G_002

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

9Y4G|1|A6|A|2366, 9Y4G|1|A6|U|2369, 9Y4G|1|A6|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y4G|1|A6|C|2365
9Y4G|1|A6|A|2366
9Y4G|1|A6|A|2367
9Y4G|1|A6|A|2368
9Y4G|1|A6|U|2369
9Y4G|1|A6|A|2370
9Y4G|1|A6|U|2371
*
9Y4G|1|A6|A|2389
9Y4G|1|A6|G|2390
9Y4G|1|A6|G|2391
*
9Y4G|1|A6|C|2824
9Y4G|1|A6|A|2825
9Y4G|1|A6|U|2826
9Y4G|1|A6|G|2827
9Y4G|1|A6|U|2828
9Y4G|1|A6|U|2829
*
9Y4G|1|A6|A|3856
9Y4G|1|A6|G|3857

Current chains

Chain A6

LSU-beta rRNA (2108-MER)

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain CP

60S ribosomal protein L17

Chain CR

60S ribosomal protein L19

Chain Cd

60S ribosomal protein L31