J4_9Y4G_009

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

9Y4G|1|B2|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9Y4G_009 not in the Motif Atlas

Homologous match to J4_9H3G_013

Geometric discrepancy: 0.2054

The information below is about J4_9H3G_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_15241.4

Basepair signature

cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW

Number of instances in this motif group

4

Unit IDs

9Y4G|1|B2|C|98
9Y4G|1|B2|A|99
9Y4G|1|B2|U|100
9Y4G|1|B2|U|101
9Y4G|1|B2|A|102
9Y4G|1|B2|A|103
9Y4G|1|B2|A|104
9Y4G|1|B2|U|105
9Y4G|1|B2|C|106
*
9Y4G|1|B2|G|355
9Y4G|1|B2|C|356
9Y4G|1|B2|C|357
*
9Y4G|1|B2|G|405
9Y4G|1|B2|U|406
9Y4G|1|B2|G|407
9Y4G|1|B2|A|408
9Y4G|1|B2|C|409
*
9Y4G|1|B2|G|431
9Y4G|1|B2|G|432

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4, X isoform

Chain AI

40S ribosomal protein S8

Chain AL

40S ribosomal protein S11

Chain AX

40S ribosomal protein S23