J4_9Y4G_010
3D structure
- PDB id
- 9Y4G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 9Y4G|1|B2|A|672, 9Y4G|1|B2|A|1083, 9Y4G|1|B2|C|1085, 9Y4G|1|B2|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Y4G|1|B2|A|671
9Y4G|1|B2|A|672
9Y4G|1|B2|G|673
*
9Y4G|1|B2|C|1032
9Y4G|1|B2|G|1033
9Y4G|1|B2|A|1034
9Y4G|1|B2|A|1035
9Y4G|1|B2|A|1036
9Y4G|1|B2|G|1037
*
9Y4G|1|B2|C|1078
9Y4G|1|B2|C|1079
9Y4G|1|B2|A|1080
9Y4G|1|B2|U|1081
9Y4G|1|B2|A|1082
9Y4G|1|B2|A|1083
9Y4G|1|B2|A|1084
9Y4G|1|B2|C|1085
9Y4G|1|B2|G|1086
9Y4G|1|B2|A|1087
9Y4G|1|B2|U|1088
9Y4G|1|B2|G|1089
*
9Y4G|1|B2|U|1160
9Y4G|1|B2|U|1161
Current chains
- Chain B2
- 18S ribosomal RNA
Nearby chains
- Chain A5
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL
- 40S ribosomal protein S11
- Chain AN
- 40S ribosomal protein S13
- Chain AO
- 40S ribosomal protein S14
- Chain AW
- 40S ribosomal protein S15a
- Chain AX
- 40S ribosomal protein S23
- Chain Aa
- 40S ribosomal protein S26
- Chain Cn
- 60S ribosomal protein L41
- Chain Cp
- 60S ribosomal protein L37a
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