J4_9Y79_001

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGG*CGU*AAGGUCG*CC

Length

16 nucleotides

Bulged bases

9Y79|1|A|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9Y79_001 not in the Motif Atlas

Homologous match to J4_4V9Q_031

Geometric discrepancy: 0.3384

The information below is about J4_4V9Q_031

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.2

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

49

Unit IDs

9Y79|1|A|G|7
9Y79|1|A|U|8
9Y79|1|A|G|9
9Y79|1|A|G|10
*
9Y79|1|A|C|25
9Y79|1|A|G|26
9Y79|1|A|U|27
*
9Y79|1|A|A|43
9Y79|1|A|A|44
9Y79|1|A|G|45
9Y79|1|A|G|46
9Y79|1|A|U|47
9Y79|1|A|C|48
9Y79|1|A|G|49
*
9Y79|1|A|C|65
9Y79|1|A|C|66

Current chains

Chain A

E-site and P-site tRNA (fMet)

Nearby chains

Chain M

Small ribosomal subunit protein uS7

Chain k

50S ribosomal protein L33