J4_9Y79_002
3D structure
- PDB id
- 9Y79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 9Y79|1|B|U|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9Y79_002 not in the Motif Atlas
- Homologous match to J4_1IL2_001
- Geometric discrepancy: 0.3495
- The information below is about J4_1IL2_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.2
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 49
Unit IDs
9Y79|1|B|G|7
9Y79|1|B|U|8
9Y79|1|B|G|9
9Y79|1|B|G|10
*
9Y79|1|B|C|25
9Y79|1|B|G|26
9Y79|1|B|U|27
*
9Y79|1|B|A|43
9Y79|1|B|A|44
9Y79|1|B|G|45
9Y79|1|B|G|46
9Y79|1|B|U|47
9Y79|1|B|C|48
9Y79|1|B|G|49
*
9Y79|1|B|C|65
9Y79|1|B|C|66
Current chains
- Chain B
- E-site and P-site tRNA (fMet)
Nearby chains
- Chain D
- Small subunit ribosomal RNA; SSU rRNA
- Chain X
- Small ribosomal subunit protein uS13
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain b
- 50S ribosomal protein L27
- Chain v
- 50S ribosomal protein L16
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