J4_9Y79_003

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9Y79|1|D|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9Y79_003 not in the Motif Atlas

Homologous match to J4_6CZR_027

Geometric discrepancy: 0.539

The information below is about J4_6CZR_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9Y79|1|D|G|115
9Y79|1|D|A|116
9Y79|1|D|G|117
9Y79|1|D|U|118
9Y79|1|D|A|119
9Y79|1|D|A|120
9Y79|1|D|U|121
9Y79|1|D|G|122
*
9Y79|1|D|U|239
9Y79|1|D|G|240
*
9Y79|1|D|C|286
9Y79|1|D|U|287
9Y79|1|D|A|288
9Y79|1|D|G|289
*
9Y79|1|D|C|311
9Y79|1|D|C|312

Current chains

Chain D

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S12

Chain U

Small ribosomal subunit protein bS16

Chain V

Small ribosomal subunit protein uS17