J4_9Y79_004

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9Y79|1|D|C|183, 9Y79|1|D|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y79|1|D|G|142
9Y79|1|D|A|143
9Y79|1|D|G|144
*
9Y79|1|D|C|178
9Y79|1|D|A|179
9Y79|1|D|U|180
9Y79|1|D|A|181
9Y79|1|D|A|182
9Y79|1|D|C|183
9Y79|1|D|G|184
*
9Y79|1|D|C|193
9Y79|1|D|C|194
9Y79|1|D|A|195
9Y79|1|D|A|196
9Y79|1|D|A|197
9Y79|1|D|G|198
*
9Y79|1|D|U|219
9Y79|1|D|G|220
9Y79|1|D|C|221

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

Small ribosomal subunit protein bS20