J4_9Y79_006

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9Y79|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9Y79_006 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2805

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.3

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9Y79|1|a|C|268
9Y79|1|a|C|269
*
9Y79|1|a|G|370
9Y79|1|a|A|371
9Y79|1|a|G|372
9Y79|1|a|U|373
9Y79|1|a|A|374
9Y79|1|a|G|375
*
9Y79|1|a|U|399
9Y79|1|a|G|400
9Y79|1|a|A|401
9Y79|1|a|A|402
9Y79|1|a|U|403
9Y79|1|a|A|404
9Y79|1|a|U|405
9Y79|1|a|G|406
*
9Y79|1|a|C|421
9Y79|1|a|A|422
9Y79|1|a|A|423
9Y79|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28

Chain r

Large ribosomal subunit protein bL9