J4_9Y79_007

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9Y79_007 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.1073

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9Y79|1|a|G|297
9Y79|1|a|G|298
9Y79|1|a|A|299
9Y79|1|a|A|300
9Y79|1|a|G|301
*
9Y79|1|a|C|316
9Y79|1|a|G|317
9Y79|1|a|C|318
9Y79|1|a|G|319
*
9Y79|1|a|C|323
9Y79|1|a|A|324
9Y79|1|a|G|325
*
9Y79|1|a|C|337
9Y79|1|a|G|338
9Y79|1|a|U|339
9Y79|1|a|A|340
9Y79|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L24

Chain l

Large ribosomal subunit protein uL4