J4_9Y79_008

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9Y79|1|a|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y79|1|a|C|601
9Y79|1|a|A|602
9Y79|1|a|A|603
9Y79|1|a|G|604
*
9Y79|1|a|C|624
9Y79|1|a|G|625
9Y79|1|a|A|626
9Y79|1|a|A|627
9Y79|1|a|G|628
*
9Y79|1|a|C|635
9Y79|1|a|G|636
9Y79|1|a|A|637
9Y79|1|a|G|638
*
9Y79|1|a|C|650
9Y79|1|a|G|651
9Y79|1|a|U|652
9Y79|1|a|U|653
9Y79|1|a|A|654
9Y79|1|a|A|655
9Y79|1|a|G|656

Current chains

Chain a

23S rRNA

Nearby chains

Chain l

Large ribosomal subunit protein uL4

Chain o

50S ribosomal protein L35

Chain u

Large ribosomal subunit protein uL15