J4_9Y79_011

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

9Y79|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9Y79_011 not in the Motif Atlas

Homologous match to J4_7A0S_006

Geometric discrepancy: 0.2322

The information below is about J4_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.2

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

9Y79|1|a|U|1313
9Y79|1|a|C|1314
*
9Y79|1|a|G|1338
9Y79|1|a|G|1339
9Y79|1|a|U|1340
9Y79|1|a|G|1341
9Y79|1|a|A|1342
9Y79|1|a|G|1343
*
9Y79|1|a|C|1404
9Y79|1|a|U|1405
*
9Y79|1|a|A|1597
9Y79|1|a|A|1598
9Y79|1|a|U|1599
9Y79|1|a|C|1600
9Y79|1|a|G|1601
9Y79|1|a|U|1602
9Y79|1|a|A|1603

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L23