J4_9Y79_015

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y79|1|a|G|2643
9Y79|1|a|G|2644
9Y79|1|a|G|2645
9Y79|1|a|C|2646
*
9Y79|1|a|G|2674
9Y79|1|a|A|2675
9Y79|1|a|C|2676
*
9Y79|1|a|G|2731
9Y79|1|a|G|2732
9Y79|1|a|A|2733
9Y79|1|a|A|2734
9Y79|1|a|G|2735
*
9Y79|1|a|U|2769
9Y79|1|a|G|2770
9Y79|1|a|C|2771

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain s

Large ribosomal subunit protein uL13

Chain t

Large ribosomal subunit protein uL14