J4_9YDC_002

3D structure

PDB id

9YDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9YDC_002 not in the Motif Atlas

Homologous match to J4_9PN5_002

Geometric discrepancy: 0.0696

The information below is about J4_9PN5_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_05458.1

Basepair signature

cWW-cWW-cHH-F-cSS-F-cWW-tHS-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

9YDC|1|A|C|185
9YDC|1|A|U|186
9YDC|1|A|A|187
9YDC|1|A|U|188
9YDC|1|A|G|189
*
9YDC|1|A|C|205
9YDC|1|A|G|206
9YDC|1|A|U|207
9YDC|1|A|C|208
*
9YDC|1|A|G|212
9YDC|1|A|A|213
9YDC|1|A|G|214
*
9YDC|1|A|C|226
9YDC|1|A|G|227
9YDC|1|A|U|228
9YDC|1|A|G|229
9YDC|1|A|U|230
9YDC|1|A|G|231

Current chains

Chain A

25S RNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain LF

60S ribosomal protein L4-A

Chain La

60S ribosomal protein L26-A