J4_9YDD_002
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CUAUG*CGUC*GAG*CGUGUG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9YDD_002 not in the Motif Atlas
- Homologous match to J4_9PN5_002
- Geometric discrepancy: 0.0587
- The information below is about J4_9PN5_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_05458.1
- Basepair signature
- cWW-cWW-cHH-F-cSS-F-cWW-tHS-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
9YDD|1|A|C|185
9YDD|1|A|U|186
9YDD|1|A|A|187
9YDD|1|A|U|188
9YDD|1|A|G|189
*
9YDD|1|A|C|205
9YDD|1|A|G|206
9YDD|1|A|U|207
9YDD|1|A|C|208
*
9YDD|1|A|G|212
9YDD|1|A|A|213
9YDD|1|A|G|214
*
9YDD|1|A|C|226
9YDD|1|A|G|227
9YDD|1|A|U|228
9YDD|1|A|G|229
9YDD|1|A|U|230
9YDD|1|A|G|231
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LF
- 60S ribosomal protein L4-A
- Chain La
- 60S ribosomal protein L26-A
Coloring options: