J4_9YDD_003
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CAAAUAU*AG*UGAU*AG
- Length
- 15 nucleotides
- Bulged bases
- 9YDD|1|A|A|1452, 9YDD|1|A|U|1455, 9YDD|1|A|A|1456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9YDD_003 not in the Motif Atlas
- Homologous match to J4_9PN5_003
- Geometric discrepancy: 0.0575
- The information below is about J4_9PN5_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_19484.2
- Basepair signature
- cWW-F-cWW-F-tSS-F-cWW-F-cWW
- Number of instances in this motif group
- 9
Unit IDs
9YDD|1|A|C|1451
9YDD|1|A|A|1452
9YDD|1|A|A|1453
9YDD|1|A|A|1454
9YDD|1|A|U|1455
9YDD|1|A|A|1456
9YDD|1|A|U|1457
*
9YDD|1|A|A|1475
9YDD|1|A|G|1476
*
9YDD|1|A|U|1877
9YDD|1|A|G|1878
9YDD|1|A|A|1879
9YDD|1|A|U|1880
*
9YDD|1|A|A|2352
9YDD|1|A|G|2353
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LR
- 60S ribosomal protein L17-A
- Chain LT
- 60S ribosomal protein L19-A
- Chain Lf
- 60S ribosomal protein L31-A
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