J4_9YDD_004
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 9YDD|1|A|U|1523
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9YDD_004 not in the Motif Atlas
- Homologous match to J4_9SUM_004
- Geometric discrepancy: 0.0462
- The information below is about J4_9SUM_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_17758.2
- Basepair signature
- cWW-F-cHW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
9YDD|1|A|G|1492
9YDD|1|A|G|1493
9YDD|1|A|U|1494
9YDD|1|A|U|1495
9YDD|1|A|C|1496
*
9YDD|1|A|G|1520
9YDD|1|A|G|1521
9YDD|1|A|U|1522
9YDD|1|A|U|1523
9YDD|1|A|A|1524
9YDD|1|A|G|1525
*
9YDD|1|A|C|1614
9YDD|1|A|C|1615
*
9YDD|1|A|G|1829
9YDD|1|A|G|1830
9YDD|1|A|U|1831
9YDD|1|A|C|1832
9YDD|1|A|G|1833
9YDD|1|A|U|1834
9YDD|1|A|A|1835
9YDD|1|A|C|1836
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LT
- 60S ribosomal protein L19-A
- Chain LZ
- 60S ribosomal protein L25
- Chain Li
- 60S ribosomal protein L34-A
- Chain Ll
- 60S ribosomal protein L37-A
- Chain Lm
- 60S ribosomal protein L38
- Chain Ln
- 60S ribosomal protein L39
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