J4_9YDD_005
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GG*CU*AG*UC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9YDD_005 not in the Motif Atlas
- Homologous match to J4_9AXU_006
- Geometric discrepancy: 0.1472
- The information below is about J4_9AXU_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_75575.3
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
9YDD|1|A|G|1674
9YDD|1|A|G|1675
*
9YDD|1|A|C|1693
9YDD|1|A|U|1694
*
9YDD|1|A|A|1752
9YDD|1|A|G|1753
*
9YDD|1|A|U|1772
9YDD|1|A|C|1773
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LW
- 60S ribosomal protein L22-A
- Chain Li
- 60S ribosomal protein L34-A
- Chain Lm
- 60S ribosomal protein L38
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