J4_9YDD_007
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 9YDD|1|A|U|2314
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9YDD_007 not in the Motif Atlas
- Homologous match to J4_9SUM_007
- Geometric discrepancy: 0.0819
- The information below is about J4_9SUM_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_21738.2
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tSW-F-cSH-F-F
- Number of instances in this motif group
- 3
Unit IDs
9YDD|1|A|C|2192
9YDD|1|A|U|2193
9YDD|1|A|G|2194
*
9YDD|1|A|C|2248
9YDD|1|A|G|2249
*
9YDD|1|A|C|2267
9YDD|1|A|U|2268
9YDD|1|A|U|2269
9YDD|1|A|A|2270
9YDD|1|A|A|2271
9YDD|1|A|G|2272
9YDD|1|A|G|2273
9YDD|1|A|U|2274
9YDD|1|A|A|2275
9YDD|1|A|G|2276
*
9YDD|1|A|U|2310
9YDD|1|A|G|2311
9YDD|1|A|A|2312
9YDD|1|A|A|2313
9YDD|1|A|U|2314
9YDD|1|A|G|2315
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain E
- Small subunit ribosomal RNA; SSU rRNA
- Chain LD
- 60S ribosomal protein L2-A
- Chain Lp
- 60S ribosomal protein L41-A
- Chain n
- Transfer RNA; tRNA
Coloring options: