J4_9YDE_002

3D structure

PDB id

9YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9YDE_002 not in the Motif Atlas

Homologous match to J4_9PN5_002

Geometric discrepancy: 0.0656

The information below is about J4_9PN5_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_05458.1

Basepair signature

cWW-cWW-cHH-F-cSS-F-cWW-tHS-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

9YDE|1|A|C|185
9YDE|1|A|U|186
9YDE|1|A|A|187
9YDE|1|A|U|188
9YDE|1|A|G|189
*
9YDE|1|A|C|205
9YDE|1|A|G|206
9YDE|1|A|U|207
9YDE|1|A|C|208
*
9YDE|1|A|G|212
9YDE|1|A|A|213
9YDE|1|A|G|214
*
9YDE|1|A|C|226
9YDE|1|A|G|227
9YDE|1|A|U|228
9YDE|1|A|G|229
9YDE|1|A|U|230
9YDE|1|A|G|231

Current chains

Chain A

25S RNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain LF

60S ribosomal protein L4-A

Chain La

60S ribosomal protein L26-A