J4_9YPV_007
3D structure
- PDB id
- 9YPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 9YPV|1|5|C|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9YPV_007 not in the Motif Atlas
- Homologous match to J4_9PN5_004
- Geometric discrepancy: 0.0682
- The information below is about J4_9PN5_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_17758.2
- Basepair signature
- cWW-F-cHW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
9YPV|1|5|G|2406
9YPV|1|5|G|2407
9YPV|1|5|U|2408
9YPV|1|5|U|2409
9YPV|1|5|C|2410
*
9YPV|1|5|G|2434
9YPV|1|5|G|2435
9YPV|1|5|U|2436
9YPV|1|5|C|2437
9YPV|1|5|A|2438
9YPV|1|5|G|2439
*
9YPV|1|5|U|2538
9YPV|1|5|C|2539
*
9YPV|1|5|G|2777
9YPV|1|5|G|2778
9YPV|1|5|C|2779
9YPV|1|5|C|2780
9YPV|1|5|G|2781
9YPV|1|5|U|2782
9YPV|1|5|A|2783
9YPV|1|5|C|2784
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain R
- Ribosomal protein L19
- Chain X
- eL23
- Chain g
- Large ribosomal subunit protein eL34
- Chain h
- eL35
- Chain j
- Ribosomal protein L37
- Chain k
- eL38
- Chain l
- eL39
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