J4_9ZTL_005

3D structure

PDB id

9ZTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single Particle Cryo EM Analysis of a Ribosome Nascent Globin Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.91 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9ZTL|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9ZTL_005 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2472

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9ZTL|1|a|C|268
9ZTL|1|a|C|269
*
9ZTL|1|a|G|370
9ZTL|1|a|A|371
9ZTL|1|a|G|372
9ZTL|1|a|U|373
9ZTL|1|a|A|374
9ZTL|1|a|G|375
*
9ZTL|1|a|U|399
9ZTL|1|a|G|400
9ZTL|1|a|A|401
9ZTL|1|a|A|402
9ZTL|1|a|U|403
9ZTL|1|a|A|404
9ZTL|1|a|U|405
9ZTL|1|a|G|406
*
9ZTL|1|a|C|421
9ZTL|1|a|A|422
9ZTL|1|a|A|423
9ZTL|1|a|G|424

Current chains

Chain a

23s rRNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28