J5_10PX_008
3D structure
- PDB id
- 10PX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.45 Å
Loop
- Sequence
- CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_10PX_008 not in the Motif Atlas
- Homologous match to J5_6CZR_020
- Geometric discrepancy: 0.1204
- The information below is about J5_6CZR_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_42859.1
- Basepair signature
- cWW-F-tWH-F-F-cWW-cWW-cWH-F-F-cWW-tSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
10PX|1|1a|C|36
10PX|1|1a|U|37
10PX|1|1a|G|38
10PX|1|1a|G|39
*
10PX|1|1a|C|403
10PX|1|1a|U|404
10PX|1|1a|U|405
10PX|1|1a|G|406
*
10PX|1|1a|C|436
10PX|1|1a|U|437
10PX|1|1a|G|438
10PX|1|1a|A|439
10PX|1|1a|A|441
10PX|1|1a|C|442
*
10PX|1|1a|G|492
10PX|1|1a|G|493
10PX|1|1a|U|494
10PX|1|1a|A|495
10PX|1|1a|A|496
10PX|1|1a|U|498
10PX|1|1a|A|499
10PX|1|1a|G|500
*
10PX|1|1a|C|545
10PX|1|1a|G|546
10PX|1|1a|A|547
10PX|1|1a|G|548
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1d
- 30S ribosomal protein S4
- Chain 1l
- 30S ribosomal protein S12
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