Motif J5_42859.1 Version J5_42859.1 of this group appears in releases 3.18 to 3.95

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4	break		5		6		7		8	break		9		10		11		12		13		14	break		15		16		17		18		19		20		21		22	break		23		24		25		26	1-26	4-5	6-20	7-21	8-9	10-18	11-19	12-17	13-16	14-15	20-25	22-23
1	J5_6CZR_020	6CZR	0.0000	0	1a	SSU rRNA	C	37	U	38	G	39	G	40	*	C	399	U	400	U	401	G	402	*	C	432	U	433	G	434	A	435	A	436	C	437	*	G	477	G	478	U	479	A	480	A	481	U	482	A	483	G	484	*	C	529	G	530	A	531	G	532	cWW	cWW	cWH		cWW	tWH	ntSH		ntHS	ncWW	tWH	cWW
2	J5_4LFB_001	4LFB	0.1100	0	A	SSU rRNA	C	36	U	37	G	38	G	39	*	C	403	U	404	U	405	G	406	*	C	436	U	437	G	438	A	439	A	440	C	442	*	G	492	G	494	U	495	A	496	A	497	U	498	A	499	G	500	*	C	545	G	546	A	547	G	548	cWW	cWW	cWH	cWH	cWW	tWH	tSH	tHW	tHS	cWW	tWH	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUGGCUUGCUGAACGGUAAUAGCGAG	2

Non-Watson-Crick part of the motif

Sequence	Counts
UGUUUGAAGUAAUAGA	2

Release history

Release	3.18	3.19	3.20	3.21	3.22	3.23	3.24	3.25	3.26	3.27	3.28	3.29	3.30	3.31	3.32	3.33	3.34	3.35	3.36	3.37	3.38	3.39	3.40	3.41	3.42	3.43	3.44	3.45	3.46	3.47	3.48	3.49	3.50	3.51	3.52	3.53	3.54	3.55	3.56	3.57	3.58	3.59	3.60	3.61	3.62	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76	3.77	3.78	3.79	3.80	3.81	3.82	3.83	3.84	3.85	3.86	3.87	3.88	3.89	3.90	3.91	3.92	3.93	3.94	3.95
Date	2019-05-03	2019-05-31	2019-06-28	2019-07-26	2019-08-23	2019-09-19	2019-10-16	2019-11-13	2019-12-11	2020-01-08	2020-02-05	2020-03-04	2020-04-01	2020-04-29	2020-05-27	2020-06-24	2020-07-22	2020-08-19	2020-09-16	2020-10-14	2020-11-11	2020-12-09	2021-01-06	2021-02-03	2021-03-03	2021-03-31	2021-04-28	2021-05-26	2021-06-23	2021-07-21	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05	2022-02-02	2022-03-02	2022-03-30	2022-04-27	2022-05-25	2022-06-22	2022-07-20	2022-08-17	2022-09-14	2022-10-12	2022-11-09	2022-12-07	2023-01-04	2023-02-01	2023-03-01	2023-03-29	2023-04-26	2023-05-24	2023-06-21	2023-07-19	2023-08-16	2023-09-13	2023-10-11	2023-11-08	2023-12-06	2024-01-03	2024-01-31	2024-02-28	2024-03-27	2024-04-24	2024-05-22	2024-06-19	2024-07-17	2024-08-14	2024-09-11	2024-10-09	2024-11-06	2024-12-04	2025-01-01	2025-01-29	2025-02-26	2025-03-26
Status	New id, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (2)
Basepair signature: cWW-F-tWH-F-F-cWW-cWW-cWH-F-F-cWW-tSH-tWH-F-tHS-F-cWW
Heat map statistics: Min 0.11 | Avg 0.05 | Max 0.11

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