J5_11DG_005
3D structure
- PDB id
- 11DG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 11DG|1|a|A|532, 11DG|1|a|U|562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_11DG_005 not in the Motif Atlas
- Homologous match to J5_7A0S_003
- Geometric discrepancy: 0.2888
- The information below is about J5_7A0S_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
11DG|1|a|C|531
11DG|1|a|A|532
11DG|1|a|G|533
*
11DG|1|a|C|560
11DG|1|a|G|561
11DG|1|a|U|562
11DG|1|a|A|563
11DG|1|a|C|564
*
11DG|1|a|G|577
11DG|1|a|G|578
11DG|1|a|G|579
*
11DG|1|a|C|1261
11DG|1|a|A|1262
*
11DG|1|a|U|2017
11DG|1|a|G|2018
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain e
- Large ribosomal subunit protein uL4
- Chain p
- 50S ribosomal protein L20
- Chain q
- Large ribosomal subunit protein bL21
- Chain r
- Large ribosomal subunit protein uL22
- Chain z
- 50S ribosomal protein L32
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