J5_11GG_002
3D structure
- PDB id
- 11GG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 11GG|1|C|A|103, 11GG|1|C|C|346, 11GG|1|C|A|347
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_11GG_002 not in the Motif Atlas
- Homologous match to J5_6CZR_021
- Geometric discrepancy: 0.1555
- The information below is about J5_6CZR_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.5
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
11GG|1|C|C|58
11GG|1|C|A|59
11GG|1|C|A|60
11GG|1|C|G|61
*
11GG|1|C|C|100
11GG|1|C|G|101
11GG|1|C|G|102
11GG|1|C|A|103
11GG|1|C|C|104
11GG|1|C|G|105
11GG|1|C|G|106
11GG|1|C|G|107
*
11GG|1|C|C|308
11GG|1|C|A|309
11GG|1|C|C|310
*
11GG|1|C|G|331
11GG|1|C|A|332
11GG|1|C|C|333
*
11GG|1|C|G|344
11GG|1|C|G|345
11GG|1|C|C|346
11GG|1|C|A|347
11GG|1|C|G|348
Current chains
- Chain C
- 16S ribosomal RNA
Nearby chains
- Chain 2
- Small ribosomal subunit protein bS20
- Chain S
- Large ribosomal subunit protein uL14
- Chain X
- Large ribosomal subunit protein bL19
- Chain x
- Small ribosomal subunit protein bS16
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