J5_11GG_008
3D structure
- PDB id
- 11GG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 11GG|1|I|U|2076, 11GG|1|I|G|2428, 11GG|1|I|G|2429, 11GG|1|I|A|2430, 11GG|1|I|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_11GG_008 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.0911
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
11GG|1|I|U|2074
11GG|1|I|U|2075
11GG|1|I|U|2076
11GG|1|I|A|2077
*
11GG|1|I|U|2243
11GG|1|I|U|2244
11GG|1|I|U|2245
11GG|1|I|G|2246
*
11GG|1|I|C|2258
11GG|1|I|U|2259
*
11GG|1|I|A|2281
11GG|1|I|G|2282
*
11GG|1|I|C|2427
11GG|1|I|G|2428
11GG|1|I|G|2429
11GG|1|I|A|2430
11GG|1|I|U|2431
11GG|1|I|A|2432
11GG|1|I|A|2433
11GG|1|I|A|2434
11GG|1|I|A|2435
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain K
- 50S ribosomal protein L2
- Chain T
- Large ribosomal subunit protein uL15
- Chain e
- 50S ribosomal protein L27
- Chain f
- 50S ribosomal protein L28
- Chain l
- 50S ribosomal protein L35
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