J5_11HV_001
3D structure
- PDB id
- 11HV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 60S ribosomal subunit with eEF2 domain IV open
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUG*CGAUGAAG*CGAACG*CG*UAC
- Length
- 22 nucleotides
- Bulged bases
- 11HV|1|58|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_11HV_001 not in the Motif Atlas
- Homologous match to J5_8GLP_001
- Geometric discrepancy: 0.0433
- The information below is about J5_8GLP_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.4
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
11HV|1|28|G|19
11HV|1|28|U|20
11HV|1|28|G|21
*
11HV|1|58|C|35
11HV|1|58|G|36
11HV|1|58|A|37
11HV|1|58|U|38
11HV|1|58|G|39
11HV|1|58|A|40
11HV|1|58|A|41
11HV|1|58|G|42
*
11HV|1|58|C|101
11HV|1|58|G|102
11HV|1|58|A|103
11HV|1|58|A|104
11HV|1|58|C|105
11HV|1|58|G|106
*
11HV|1|58|C|113
11HV|1|58|G|114
*
11HV|1|58|U|136
11HV|1|58|A|137
11HV|1|58|C|138
Current chains
- Chain 28
- 28S rRNA
- Chain 58
- 5.8S rRNA
Nearby chains
- Chain 15
- 60S ribosomal protein L15
- Chain 35
- 60S ribosomal protein L35
- Chain 37
- 60S ribosomal protein L37
- Chain 39
- 60S ribosomal protein L39
- Chain cc
- Large ribosomal subunit protein uL23
Coloring options: