J5_11IQ_001

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG

Length

26 nucleotides

Bulged bases

11IQ|1|18|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_11IQ_001 not in the Motif Atlas

Homologous match to J5_9H3G_007

Geometric discrepancy: 0.0924

The information below is about J5_9H3G_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_04786.3

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

11IQ|1|18|C|30
11IQ|1|18|U|31
11IQ|1|18|U|32
11IQ|1|18|G|33
11IQ|1|18|U|34
*
11IQ|1|18|A|521
11IQ|1|18|A|522
11IQ|1|18|A|523
11IQ|1|18|U|524
11IQ|1|18|A|525
11IQ|1|18|A|526
11IQ|1|18|C|527
*
11IQ|1|18|G|558
11IQ|1|18|G|559
11IQ|1|18|A|560
11IQ|1|18|A|561
11IQ|1|18|U|562
11IQ|1|18|G|563
*
11IQ|1|18|C|592
11IQ|1|18|C|593
11IQ|1|18|A|594
11IQ|1|18|U|595
*
11IQ|1|18|A|641
11IQ|1|18|U|642
11IQ|1|18|A|643
11IQ|1|18|G|644

Current chains

Chain 18

18S rRNA

Nearby chains

Chain RR

40S ribosomal protein S23

Chain S9

40S ribosomal protein S9

Chain YY

40S ribosomal protein S30

Chain v

Elongation factor 2