J5_11IQ_003
3D structure
- PDB id
- 11IQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,eIF5A and SERBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 11IQ|1|18|U|55, 11IQ|1|18|A|92, 11IQ|1|18|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_11IQ_003 not in the Motif Atlas
- Homologous match to J5_9PN5_009
- Geometric discrepancy: 0.0871
- The information below is about J5_9PN5_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.3
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
11IQ|1|18|C|53
11IQ|1|18|A|54
11IQ|1|18|U|55
11IQ|1|18|G|56
*
11IQ|1|18|C|89
11IQ|1|18|G|90
11IQ|1|18|A|91
11IQ|1|18|A|92
11IQ|1|18|U|93
11IQ|1|18|G|94
11IQ|1|18|G|95
11IQ|1|18|C|96
*
11IQ|1|18|G|434
11IQ|1|18|A|435
11IQ|1|18|G|436
*
11IQ|1|18|C|457
11IQ|1|18|A|458
11IQ|1|18|C|459
*
11IQ|1|18|G|470
11IQ|1|18|G|471
11IQ|1|18|C|472
11IQ|1|18|A|473
11IQ|1|18|G|474
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain 23
- Large ribosomal subunit protein uL14
- Chain S4
- 40S ribosomal protein S4
- Chain S6
- 40S ribosomal protein S6
- Chain S8
- 40S ribosomal protein S8
- Chain S9
- 40S ribosomal protein S9
- Chain SS
- 40S ribosomal protein S24
Coloring options: