J5_11JJ_001

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG

Length

26 nucleotides

Bulged bases

11JJ|1|18|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_11JJ_001 not in the Motif Atlas

Homologous match to J5_9H3G_007

Geometric discrepancy: 0.1336

The information below is about J5_9H3G_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_04786.3

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

11JJ|1|18|C|30
11JJ|1|18|U|31
11JJ|1|18|U|32
11JJ|1|18|G|33
11JJ|1|18|U|34
*
11JJ|1|18|A|521
11JJ|1|18|A|522
11JJ|1|18|A|523
11JJ|1|18|U|524
11JJ|1|18|A|525
11JJ|1|18|A|526
11JJ|1|18|C|527
*
11JJ|1|18|G|558
11JJ|1|18|G|559
11JJ|1|18|A|560
11JJ|1|18|A|561
11JJ|1|18|U|562
11JJ|1|18|G|563
*
11JJ|1|18|C|592
11JJ|1|18|C|593
11JJ|1|18|A|594
11JJ|1|18|U|595
*
11JJ|1|18|A|641
11JJ|1|18|U|642
11JJ|1|18|A|643
11JJ|1|18|G|644

Current chains

Chain 18

18S rRNA

Nearby chains

Chain RR

40S ribosomal protein S23

Chain S9

40S ribosomal protein S9

Chain YY

40S ribosomal protein S30