J5_12DP_007
3D structure
- PDB id
- 12DP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 12DP|1|1A|U|2076, 12DP|1|1A|G|2428, 12DP|1|1A|G|2429, 12DP|1|1A|A|2430, 12DP|1|1A|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_12DP_007 not in the Motif Atlas
- Homologous match to J5_8B0X_009
- Geometric discrepancy: 0.0778
- The information below is about J5_8B0X_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
12DP|1|1A|U|2074
12DP|1|1A|U|2075
12DP|1|1A|U|2076
12DP|1|1A|A|2077
*
12DP|1|1A|U|2243
12DP|1|1A|U|2244
12DP|1|1A|U|2245
12DP|1|1A|G|2246
*
12DP|1|1A|C|2258
12DP|1|1A|G|2259
*
12DP|1|1A|C|2281
12DP|1|1A|G|2282
*
12DP|1|1A|C|2427
12DP|1|1A|G|2428
12DP|1|1A|G|2429
12DP|1|1A|A|2430
12DP|1|1A|U|2431
12DP|1|1A|A|2432
12DP|1|1A|A|2433
12DP|1|1A|A|2434
12DP|1|1A|A|2435
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 11
- 50S ribosomal protein L28
- Chain 16
- 50S ribosomal protein L33
- Chain 1D
- 50S ribosomal protein L2
- Chain 1P
- 50S ribosomal protein L15
Coloring options: