J5_8B0X_009
3D structure
- PDB id
- 8B0X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 70S ribosome in the unrotated state (P and E, tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.55 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 8B0X|1|a|U|2080, 8B0X|1|a|G|2432, 8B0X|1|a|G|2433, 8B0X|1|a|A|2434, 8B0X|1|a|U|2435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8B0X_009 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.0662
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.1
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8B0X|1|a|U|2078
8B0X|1|a|U|2079
8B0X|1|a|U|2080
8B0X|1|a|A|2081
*
8B0X|1|a|U|2247
8B0X|1|a|U|2248
8B0X|1|a|U|2249
8B0X|1|a|G|2250
*
8B0X|1|a|C|2262
8B0X|1|a|U|2263
*
8B0X|1|a|A|2285
8B0X|1|a|G|2286
*
8B0X|1|a|C|2431
8B0X|1|a|G|2432
8B0X|1|a|G|2433
8B0X|1|a|A|2434
8B0X|1|a|U|2435
8B0X|1|a|A|2436
8B0X|1|a|A|2437
8B0X|1|a|A|2438
8B0X|1|a|A|2439
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 0
- 50S ribosomal protein L33
- Chain 2
- 50S ribosomal protein L35
- Chain c
- 50S ribosomal protein L2
- Chain k
- 50S ribosomal protein L15
- Chain v
- 50S ribosomal protein L27
- Chain w
- 50S ribosomal protein L28
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