J5_12DP_012

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CAG*CGUGC*GAG*CA*UG

Length

15 nucleotides

Bulged bases

12DP|1|2A|A|532, 12DP|1|2A|U|562

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_12DP_012 not in the Motif Atlas

Homologous match to J5_7A0S_003

Geometric discrepancy: 0.1168

The information below is about J5_7A0S_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_43153.6

Basepair signature

cWW-cWW-cWW-F-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

12DP|1|2A|C|531
12DP|1|2A|A|532
12DP|1|2A|G|533
*
12DP|1|2A|C|560
12DP|1|2A|G|561
12DP|1|2A|U|562
12DP|1|2A|G|563
12DP|1|2A|C|564
*
12DP|1|2A|G|577
12DP|1|2A|A|578
12DP|1|2A|G|579
*
12DP|1|2A|C|1261
12DP|1|2A|A|1262
*
12DP|1|2A|U|2017
12DP|1|2A|G|2018

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2F

50S ribosomal protein L4

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21

Chain 2W

50S ribosomal protein L22