J5_1FFK_002

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GCG*CGUAC*GAG*CC*GU

Length

15 nucleotides

Bulged bases

1FFK|1|0|U|619

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1FFK_002 not in the Motif Atlas

Homologous match to J5_4V9F_002

Geometric discrepancy: 0.028

The information below is about J5_4V9F_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_43153.6

Basepair signature

cWW-cWW-cWW-F-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

1FFK|1|0|G|537
1FFK|1|0|C|538
1FFK|1|0|G|539
*
1FFK|1|0|C|617
1FFK|1|0|G|618
1FFK|1|0|U|619
1FFK|1|0|A|620
1FFK|1|0|C|621
*
1FFK|1|0|G|634
1FFK|1|0|A|635
1FFK|1|0|G|636
*
1FFK|1|0|C|1365
1FFK|1|0|C|1366
*
1FFK|1|0|G|2058
1FFK|1|0|U|2059

Current chains

Chain 0

23S RRNA

Nearby chains

Chain C

RIBOSOMAL PROTEIN L4

Chain O

RIBOSOMAL PROTEIN L22

Chain V

RIBOSOMAL PROTEIN L32E