J5_1FJG_002

3D structure

PDB id

1FJG (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN, AND PAROMOMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

1FJG|1|A|A|109, 1FJG|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1FJG_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0561

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

1FJG|1|A|C|58
1FJG|1|A|A|59
1FJG|1|A|A|60
1FJG|1|A|G|61
*
1FJG|1|A|C|106
1FJG|1|A|G|107
1FJG|1|A|G|108
1FJG|1|A|A|109
1FJG|1|A|C|110
1FJG|1|A|G|111
1FJG|1|A|G|112
1FJG|1|A|G|113
*
1FJG|1|A|C|314
1FJG|1|A|A|315
1FJG|1|A|G|316
*
1FJG|1|A|C|337
1FJG|1|A|A|338
1FJG|1|A|C|339
*
1FJG|1|A|G|350
1FJG|1|A|G|351
1FJG|1|A|C|352
1FJG|1|A|A|353
1FJG|1|A|G|354

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16

Chain T

30S RIBOSOMAL PROTEIN S20