J5_1HNW_002

3D structure

PDB id

1HNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH TETRACYCLINE

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

1HNW|1|A|A|109, 1HNW|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1HNW_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.053

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

1HNW|1|A|C|58
1HNW|1|A|A|59
1HNW|1|A|A|60
1HNW|1|A|G|61
*
1HNW|1|A|C|106
1HNW|1|A|G|107
1HNW|1|A|G|108
1HNW|1|A|A|109
1HNW|1|A|C|110
1HNW|1|A|G|111
1HNW|1|A|G|112
1HNW|1|A|G|113
*
1HNW|1|A|C|314
1HNW|1|A|A|315
1HNW|1|A|G|316
*
1HNW|1|A|C|337
1HNW|1|A|A|338
1HNW|1|A|C|339
*
1HNW|1|A|G|350
1HNW|1|A|G|351
1HNW|1|A|C|352
1HNW|1|A|A|353
1HNW|1|A|G|354

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16

Chain T

30S RIBOSOMAL PROTEIN S20