J5_1HNX_002

3D structure

PDB id

1HNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH PACTAMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

1HNX|1|A|A|109, 1HNX|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1HNX_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0536

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.2

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

6

Unit IDs

1HNX|1|A|C|58
1HNX|1|A|A|59
1HNX|1|A|A|60
1HNX|1|A|G|61
*
1HNX|1|A|C|106
1HNX|1|A|G|107
1HNX|1|A|G|108
1HNX|1|A|A|109
1HNX|1|A|C|110
1HNX|1|A|G|111
1HNX|1|A|G|112
1HNX|1|A|G|113
*
1HNX|1|A|C|314
1HNX|1|A|A|315
1HNX|1|A|G|316
*
1HNX|1|A|C|337
1HNX|1|A|A|338
1HNX|1|A|C|339
*
1HNX|1|A|G|350
1HNX|1|A|G|351
1HNX|1|A|C|352
1HNX|1|A|A|353
1HNX|1|A|G|354

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16

Chain T

30S RIBOSOMAL PROTEIN S20