J5_1I94_002

3D structure

PDB id

1I94 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURES OF THE SMALL RIBOSOMAL SUBUNIT WITH TETRACYCLINE, EDEINE AND IF3

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

1I94|1|A|A|102, 1I94|1|A|C|347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1I94_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0814

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

1I94|1|A|C|58
1I94|1|A|A|59
1I94|1|A|A|60
1I94|1|A|G|61
*
1I94|1|A|C|99
1I94|1|A|G|100
1I94|1|A|G|101
1I94|1|A|A|102
1I94|1|A|C|103
1I94|1|A|G|104
1I94|1|A|G|105
1I94|1|A|G|106
*
1I94|1|A|C|309
1I94|1|A|A|310
1I94|1|A|G|311
*
1I94|1|A|C|332
1I94|1|A|A|333
1I94|1|A|C|334
*
1I94|1|A|G|345
1I94|1|A|G|346
1I94|1|A|C|347
1I94|1|A|A|348
1I94|1|A|G|349

Current chains

Chain A

16S RRNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16

Chain T

30S RIBOSOMAL PROTEIN S20