J5_1KD1_002
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GCG*CGUAC*GAG*CC*GU
- Length
- 15 nucleotides
- Bulged bases
- 1KD1|1|A|U|619
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_1KD1_002 not in the Motif Atlas
- Homologous match to J5_4V9F_002
- Geometric discrepancy: 0.0353
- The information below is about J5_4V9F_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
1KD1|1|A|G|537
1KD1|1|A|C|538
1KD1|1|A|G|539
*
1KD1|1|A|C|617
1KD1|1|A|G|618
1KD1|1|A|U|619
1KD1|1|A|A|620
1KD1|1|A|C|621
*
1KD1|1|A|G|634
1KD1|1|A|A|635
1KD1|1|A|G|636
*
1KD1|1|A|C|1365
1KD1|1|A|C|1366
*
1KD1|1|A|G|2058
1KD1|1|A|U|2059
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain E
- RIBOSOMAL PROTEIN L4
- Chain K
- RIBOSOMAL PROTEIN L13
- Chain S
- RIBOSOMAL PROTEIN L22
- Chain Z
- RIBOSOMAL PROTEIN L32E
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