J5_1KQS_002

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCG*CGUAC*GAG*CC*GU

Length

15 nucleotides

Bulged bases

1KQS|1|0|U|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1KQS_002 not in the Motif Atlas

Homologous match to J5_4V9F_002

Geometric discrepancy: 0.0291

The information below is about J5_4V9F_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_43153.5

Basepair signature

cWW-cWW-cWW-F-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

1KQS|1|0|G|537
1KQS|1|0|C|538
1KQS|1|0|G|539
*
1KQS|1|0|C|617
1KQS|1|0|G|618
1KQS|1|0|U|619
1KQS|1|0|A|620
1KQS|1|0|C|621
*
1KQS|1|0|G|634
1KQS|1|0|A|635
1KQS|1|0|G|636
*
1KQS|1|0|C|1365
1KQS|1|0|C|1366
*
1KQS|1|0|G|2058
1KQS|1|0|U|2059

Current chains

Chain 0

23S RRNA

Nearby chains

Chain C

RIBOSOMAL PROTEIN L4

Chain I

RIBOSOMAL PROTEIN L13

Chain Q

RIBOSOMAL PROTEIN L22

Chain X

RIBOSOMAL PROTEIN L32E