J5_1N8R_003
3D structure
- PDB id
- 1N8R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of large ribosomal subunit in complex with virginiamycin M
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GGAGUG*CGAC*GUUC*GC*GAAAAUC
- Length
- 23 nucleotides
- Bulged bases
- 1N8R|1|A|U|1359
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_1N8R_003 not in the Motif Atlas
- Homologous match to J5_4V9F_003
- Geometric discrepancy: 0.03
- The information below is about J5_4V9F_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_15067.1
- Basepair signature
- cWW-tSH-tSS-tHH-F-F-F-tWS-cWW-cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
1N8R|1|A|G|641
1N8R|1|A|G|642
1N8R|1|A|A|643
1N8R|1|A|G|644
1N8R|1|A|U|645
1N8R|1|A|G|646
*
1N8R|1|A|C|759
1N8R|1|A|G|760
1N8R|1|A|A|761
1N8R|1|A|C|762
*
1N8R|1|A|G|902
1N8R|1|A|U|903
1N8R|1|A|U|904
1N8R|1|A|C|905
*
1N8R|1|A|G|1300
1N8R|1|A|C|1301
*
1N8R|1|A|G|1354
1N8R|1|A|A|1355
1N8R|1|A|A|1356
1N8R|1|A|A|1357
1N8R|1|A|A|1358
1N8R|1|A|U|1359
1N8R|1|A|C|1360
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L4E
- Chain M
- 50S ribosomal protein L15P
- Chain Z
- 50S ribosomal protein L32E
Coloring options: