J5_1NWY_001

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AUG

Length

22 nucleotides

Bulged bases

1NWY|1|0|U|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1NWY_001 not in the Motif Atlas

Homologous match to J5_4WF9_001

Geometric discrepancy: 0.3052

The information below is about J5_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.2

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

1NWY|1|0|C|46
1NWY|1|0|G|47
1NWY|1|0|A|48
1NWY|1|0|U|49
1NWY|1|0|G|50
1NWY|1|0|A|51
1NWY|1|0|A|52
1NWY|1|0|G|53
*
1NWY|1|0|C|114
1NWY|1|0|G|115
1NWY|1|0|A|116
1NWY|1|0|A|117
1NWY|1|0|U|118
1NWY|1|0|G|119
*
1NWY|1|0|C|128
1NWY|1|0|A|129
*
1NWY|1|0|U|142
1NWY|1|0|A|143
1NWY|1|0|U|144
*
1NWY|1|0|A|153
1NWY|1|0|U|154
1NWY|1|0|G|155

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain 2

ribosomal protein L34

Chain R

ribosomal protein L23