J5_1QVF_003

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAGUG*CGAC*GUUC*GC*GAAAAUC

Length

23 nucleotides

Bulged bases

1QVF|1|0|U|1359

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1QVF_003 not in the Motif Atlas

Homologous match to J5_4V9F_003

Geometric discrepancy: 0.0197

The information below is about J5_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_15067.1

Basepair signature

cWW-tSH-tSS-tHH-F-F-F-tWS-cWW-cWW-F-cWW-cWW-F-F

Number of instances in this motif group

2

Unit IDs

1QVF|1|0|G|641
1QVF|1|0|G|642
1QVF|1|0|A|643
1QVF|1|0|G|644
1QVF|1|0|U|645
1QVF|1|0|G|646
*
1QVF|1|0|C|759
1QVF|1|0|G|760
1QVF|1|0|A|761
1QVF|1|0|C|762
*
1QVF|1|0|G|902
1QVF|1|0|U|903
1QVF|1|0|U|904
1QVF|1|0|C|905
*
1QVF|1|0|G|1300
1QVF|1|0|C|1301
*
1QVF|1|0|G|1354
1QVF|1|0|A|1355
1QVF|1|0|A|1356
1QVF|1|0|A|1357
1QVF|1|0|A|1358
1QVF|1|0|U|1359
1QVF|1|0|C|1360

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain C

50S ribosomal protein L4E

Chain K

50S ribosomal protein L15P

Chain X

50S ribosomal protein L32E